Transcript: LINC00968:5

Basic information

LNCipedia transcript ID: LINC00968:5 
HGNC Gene Symbol: LINC00968    
HGNC Full Gene Name: long intergenic non-protein coding RNA 968
Ensembl Gene ID: ENSG00000246430
Ensembl Transcript ID: ENST00000499425
Location (hg38): chr8:56518321-56559671
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2366 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00014515; ENST00000499425; ENST00000499425.1; RP11-16M8.2-001; OTTHUMT00000378656.1
Alternative gene names: XLOC_007087; linc-PENK-1; ENSG00000246430; RP11-16M8.2; ENSG00000246430.2; OTTHUMG00000164412.1; LINC00968; ENSG00000246430.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -157.7625 non-coding 
CPAT coding probability 1.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00968:5 no no no no

Available literature

  1. Li (2018), Regulatory interactions between long noncoding RNA LINC00968 and miR-9-3p in non-small cell lung cancer: A bioinformatic analysis based on miRNA microarray, GEO and TCGA., Oncol Lett
  2. Wang (2018), Long non-coding RNA LINC00968 acts as oncogene in NSCLC by activating the Wnt signaling pathway., J. Cell. Physiol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PENK-2:4
3.1 lnc-PENK-2:4
4.0 LINC00968:5
4.1 LINC00968:5
5.0 LINC00968:5
5.1 LINC00968:5
5.2 LINC00968:5