Transcript: LINC00968:3

Basic information

LNCipedia transcript ID: LINC00968:3 
HGNC Gene Symbol: LINC00968    
HGNC Full Gene Name: long intergenic non-protein coding RNA 968
Ensembl Gene ID: ENSG00000246430
Ensembl Transcript ID: ENST00000518943
Location (hg38): chr8:56520387-56559793
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 569 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518943; ENST00000518943.1; RP11-16M8.2-004; OTTHUMT00000378661.1; NONHSAT126713
Alternative gene names: ENSG00000246430; RP11-16M8.2; ENSG00000246430.2; OTTHUMG00000164412.1; LINC00968; ENSG00000246430.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.6447 non-coding 
CPAT coding probability 2.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00968:3 no no no no

Available literature

  1. Li (2018), Regulatory interactions between long noncoding RNA LINC00968 and miR-9-3p in non-small cell lung cancer: A bioinformatic analysis based on miRNA microarray, GEO and TCGA., Oncol Lett
  2. Wang (2018), Long non-coding RNA LINC00968 acts as oncogene in NSCLC by activating the Wnt signaling pathway., J. Cell. Physiol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PENK-2:2
3.1 lnc-PENK-2:2
4.0 LINC00968:3
4.1 LINC00968:3
5.0 LINC00968:3
5.1 LINC00968:3
5.2 LINC00968:3