Transcript: LINC00963:17

Basic information

LNCipedia transcript ID: LINC00963:17 
LNCipedia gene ID: LINC00963
Location (hg38): chr9:129490819-129502514
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 605 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000454635; ENST00000454635.1; RP11-492E3.1-006; OTTHUMT00000054583.2; NONHSAT135080
Alternative gene names: ENSG00000204054; RP11-492E3.1; ENSG00000204054.5; OTTHUMG00000020783.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.6352 non-coding 
CPAT coding probability 4.61% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.263157895
seqAAMHLTYETSVTPALCQTLKMEQ
orfFrame6.698853467

In stringent set: no

Locus conservation

Locus conservation?
LINC00963:17 no no no no

Available literature

  1. Chen (2018), Effects of Long Non-Coding RNA LINC00963 on Renal Interstitial Fibrosis and Oxidative Stress of Rats with Chronic Renal Failure via the Foxo Signaling Pathway., Cell. Physiol. Biochem.
  2. Yu (2017), MetaLnc9 Facilitates Lung Cancer Metastasis via a PGK1-Activated AKT/mTOR Pathway., Cancer Res.
  3. Wang (2014), Linc00963: a novel, long non-coding RNA involved in the transition of prostate cancer from androgen-dependence to androgen-independence., Int. J. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-METTL11A-1:6
3.1 lnc-METTL11A-3:6
4.0 LINC00963:17
4.1 LINC00963:17
5.0 LINC00963:17
5.1 LINC00963:17
5.2 LINC00963:17