Transcript: LINC00951:6

Basic information

LNCipedia transcript ID: LINC00951:6 
HGNC Gene Symbol: LINC00951    
HGNC Full Gene Name: long intergenic non-protein coding RNA 951
Ensembl Gene ID: ENSG00000204092
Ensembl Transcript ID: ENST00000373171
Location (hg38): chr6:40344344-40346151
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 554 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011486; ENST00000373171; ENST00000373171.2; RP11-552E20.3-001; OTTHUMT00000040481.1
Alternative gene names: XLOC_005712; linc-MOCS1-3; ENSG00000204092; RP11-552E20.3; ENSG00000204092.2; OTTHUMG00000014658.1; LINC00951; lincRNA-uc003opf.1; FLJ41649


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.512 non-coding 
CPAT coding probability 3.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00951:6 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE
  2. Wu (2013), A genetic polymorphism in lincRNA-uc003opf.1 is associated with susceptibility to esophageal squamous cell carcinoma in Chinese populations., Carcinogenesis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRFN2-2:3
3.1 lnc-LRFN2-2:3
4.0 LINC00951:6
4.1 LINC00951:6
5.0 LINC00951:6
5.1 LINC00951:6
5.2 LINC00951:6