Transcript: LINC00951:4

Basic information

LNCipedia transcript ID: LINC00951:4 
LNCipedia gene ID: LINC00951
Location (hg38): chr6:40344374-40346620
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 571 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012164; NONHSAT112466
Alternative gene names: XLOC_005712; linc-MOCS1-3; lincRNA-uc003opf.1; FLJ41649


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.512 non-coding 
CPAT coding probability 31.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00951:4 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE
  2. Wu (2013), A genetic polymorphism in lincRNA-uc003opf.1 is associated with susceptibility to esophageal squamous cell carcinoma in Chinese populations., Carcinogenesis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRFN2-2:2
3.1 lnc-LRFN2-2:2
4.0 LINC00951:4
4.1 LINC00951:4
5.0 LINC00951:4
5.1 LINC00951:4
5.2 LINC00951:4