Transcript: LINC00944:6

Basic information

LNCipedia transcript ID: LINC00944:6 
HGNC Gene Symbol: LINC00944    
HGNC Full Gene Name: long intergenic non-protein coding RNA 944
Ensembl Gene ID: ENSG00000256128
Ensembl Transcript ID: ENST00000545508
Location (hg38): chr12:126752164-126761045
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 402 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000545508; ENST00000545508.1; RP11-173C20.2-004; OTTHUMT00000399874.1
Alternative gene names: ENSG00000256128; RP11-173C20.2; ENSG00000256128.1; OTTHUMG00000168480.1; LINC00944; ENSG00000256128.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.794 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00944:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DHX37-10:6
3.1 lnc-DHX37-10:6
4.0 LINC00944:6
4.1 LINC00944:6
5.0 LINC00944:6
5.1 LINC00944:6
5.2 LINC00944:6