Transcript: LINC00944:2

Basic information

LNCipedia transcript ID: LINC00944:2 
HGNC Gene Symbol: LINC00944    
HGNC Full Gene Name: long intergenic non-protein coding RNA 944
Ensembl Gene ID: ENSG00000256128
Ensembl Transcript ID: ENST00000542248
Location (hg38): chr12:126748056-126772356
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 548 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542248; ENST00000542248.1; RP11-173C20.2-002; OTTHUMT00000399873.1; NONHSAT031827; ENST00000542248.5
Alternative gene names: ENSG00000256128; RP11-173C20.2; ENSG00000256128.1; OTTHUMG00000168480.1; LINC00944; ENSG00000256128.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.794 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00944:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DHX37-10:2
3.1 lnc-DHX37-10:2
4.0 LINC00944:2
4.1 LINC00944:2
5.0 LINC00944:2
5.1 LINC00944:2
5.2 LINC00944:2