Transcript: LINC00940:2

Basic information

LNCipedia transcript ID: LINC00940:2 
HGNC Gene Symbol: LINC00940    
HGNC Full Gene Name: long intergenic non-protein coding RNA 940
Ensembl Gene ID: ENSG00000235049
Ensembl Transcript ID: ENST00000418006
Location (hg38): chr12:1929202-1936574
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2350 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00020202; ENST00000418006; ENST00000418006.1; RP5-1096D14.2-001; OTTHUMT00000398243.1
Alternative gene names: XLOC_009975; linc-CACNA2D4; ENSG00000235049; RP5-1096D14.2; ENSG00000235049.1; OTTHUMG00000168112.1; LINC00940;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.7939 non-coding 
CPAT coding probability 96.62% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00940:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DCP1B-1:1
3.1 lnc-DCP1B-1:1
4.0 LINC00940:2
4.1 LINC00940:2
5.0 LINC00940:2
5.1 LINC00940:2
5.2 LINC00940:2