Transcript: LINC00917:7

Basic information

LNCipedia transcript ID: LINC00917:7 
HGNC Gene Symbol: LINC00917    
HGNC Full Gene Name: long intergenic non-protein coding RNA 917
Ensembl Gene ID: ENSG00000168367
Ensembl Transcript ID: ENST00000595169
Location (hg38): chr16:86337995-86349639
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 839 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT144197; ENST00000595169.1; ENST00000595169.5
Alternative gene names: ENSG00000168367.5; LINC00917; ENSG00000168367.9;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.3589 non-coding 
CPAT coding probability 10.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00917:7 no no no no

Available literature

  1. Chen (2015), Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC092327.1-1:12
4.0 LINC00917:7
4.1 LINC00917:7
5.0 LINC00917:7
5.1 LINC00917:7
5.2 LINC00917:7