Transcript: LINC00917:12

Basic information

LNCipedia transcript ID: LINC00917:12 
LNCipedia gene ID: LINC00917
Location (hg38): chr16:86331600-86345522
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2680 bp
Exons: 7
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024765; NONHSAT144191
Alternative gene names: XLOC_012045; linc-COX4NB-6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.7272 non-coding 
CPAT coding probability 36.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00917:12 no no no no

Available literature

  1. Chen (2015), Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC092327.1-1:5
3.1 lnc-AC092327.1-1:5
4.0 LINC00917:12
4.1 LINC00917:12
5.0 LINC00917:12
5.1 LINC00917:12
5.2 LINC00917:12