Transcript: LINC00911:3

Basic information

LNCipedia transcript ID: LINC00911:3 
HGNC Gene Symbol: LINC00911    
HGNC Full Gene Name: long intergenic non-protein coding RNA 911
Ensembl Gene ID: ENSG00000259107
Ensembl Transcript ID: ENST00000555272
RefSeq ID: NR_102737
Location (hg38): chr14:85393879-85420074
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000555272; ENST00000555272.1; CTD-2128A3.1-001; OTTHUMT00000413189.1; NONHSAT038115; NR_102737; NR_102737.1
Alternative gene names: ENSG00000259107; CTD-2128A3.1; ENSG00000259107.1; OTTHUMG00000171369.1; LINC00911;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -189.2596 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00911:3 no no no no

Available literature

  1. Wang (2016), Transcriptome Analysis of Long Noncoding RNAs in Toll-Like Receptor 3-Activated Mesenchymal Stem Cells., Stem Cells Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-497E19.2.1-1:2
3.1 lnc-RP11-497E19.2.1-1:2
4.0 LINC00911:3
4.1 LINC00911:3
5.0 LINC00911:3
5.1 LINC00911:3
5.2 LINC00911:3