Transcript: LINC00901:5

Basic information

LNCipedia transcript ID: LINC00901:5 
LNCipedia gene ID: LINC00901
Location (hg38): chr3:116921440-116932238
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1443 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000242385.1|ENST00000487512.1
Alternative gene names: TCONS_00005428; BC040587


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -120.3938 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00901:5 yes no no no

Available literature

  1. Chi (2014), Role of BC040587 as a predictor of poor outcome in breast cancer., Cancer Cell Int.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00901:5
5.0 LINC00901:5
5.1 LINC00901:5
5.2 LINC00901:5