Transcript: LINC00901:3

Basic information

LNCipedia transcript ID: LINC00901:3 
HGNC Gene Symbol: LINC00901    
HGNC Full Gene Name: long intergenic non-protein coding RNA 901
Ensembl Gene ID: ENSG00000242385
Ensembl Transcript ID: ENST00000487512
RefSeq ID: NR_121607
Location (hg38): chr3:116921431-116932238
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1452 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000487512.1; LSAMP-AS4-001; OTTHUMT00000354826.2; NONHSAT091322; NR_121607; NR_121607.1
Alternative gene names: ENSG00000242385.1; LSAMP-AS4; OTTHUMG00000159347.2; LINC00901; TCONS_00005428; BC040587


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.7274 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00901:3 yes no no no

Available literature

  1. Chi (2014), Role of BC040587 as a predictor of poor outcome in breast cancer., Cancer Cell Int.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GAP43-8:2
4.0 LINC00901:3
4.1 LINC00901:3
5.0 LINC00901:3
5.1 LINC00901:3
5.2 LINC00901:3