Transcript: LINC00901:1

Basic information

LNCipedia transcript ID: LINC00901:1 
LNCipedia gene ID: LINC00901
Location (hg38): chr3:116919852-116932398
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1653 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006163; NONHSAT091321
Alternative gene names: XLOC_002769; linc-C3orf30-7; TCONS_00005428; BC040587


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -223.5988 non-coding 
CPAT coding probability 1.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00901:1 yes no no no

Available literature

  1. Chi (2014), Role of BC040587 as a predictor of poor outcome in breast cancer., Cancer Cell Int.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GAP43-5:1
3.1 lnc-GAP43-8:1
4.0 LINC00901:1
4.1 LINC00901:1
5.0 LINC00901:1
5.1 LINC00901:1
5.2 LINC00901:1