Transcript: LINC00894:38

Basic information

LNCipedia transcript ID: LINC00894:38 
LNCipedia gene ID: LINC00894
Location (hg38): chrX:149938617-149964180
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6101 bp
Exons: 9
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000235703.1|ENCT00000473227.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.0352 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00894:38 no no no no

Available literature

  1. Zhang (2018), Downregulation of LINC00894-002 Contributes to Tamoxifen Resistance by Enhancing the TGF-β Signaling Pathway., Biochemistry Mosc.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00894:38
5.0 LINC00894:38
5.1 LINC00894:38
5.2 LINC00894:38