Transcript: LINC00885:1

Basic information

LNCipedia transcript ID: LINC00885:1 
HGNC Gene Symbol: LINC00885    
HGNC Full Gene Name: long intergenic non-protein coding RNA 885
Ensembl Gene ID: ENSG00000224652
Ensembl Transcript ID: ENST00000457079
RefSeq ID: NR_034088
Location (hg38): chr3:196142636-196160890
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1828 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000457079; TCONS_00005389; ENST00000457079.1; AC139666.1-001; OTTHUMT00000341345.1; NONHSAT094296; NR_034088; NR_034088.1
Alternative gene names: ENSG00000224652; XLOC_003002; linc-OSTalpha-1; AC139666.1; ENSG00000224652.1; OTTHUMG00000155713.1; LINC00885;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.8371 non-coding 
CPAT coding probability 10.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00885:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC069257.9.1-1:1
3.1 lnc-AC069257.9.1-2:1
4.0 LINC00885:1
4.1 LINC00885:1
5.0 LINC00885:1
5.1 LINC00885:1
5.2 LINC00885:1