Transcript: LINC00882:42

Basic information

LNCipedia transcript ID: LINC00882:42 
LNCipedia gene ID: LINC00882
Location (hg38): chr3:107380644-107382160
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 303 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT091049; ENST00000595232.1
Alternative gene names: ENSG00000239828.2; RP11-446H18.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.8081 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00882:42 no no no no

Available literature

  1. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CD47-3:3
4.0 lnc-CD47-3:3
4.1 LINC00882:42
5.0 LINC00882:42
5.1 LINC00882:42
5.2 LINC00882:42