Transcript: LINC00882:17

Basic information

LNCipedia transcript ID: LINC00882:17 
LNCipedia gene ID: LINC00882
Location (hg38): chr3:106920741-106922125
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 388 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006587; NONHSAT091016
Alternative gene names: XLOC_003203; linc-CBLB-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.3391 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00882:17 no no no no

Available literature

  1. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD47-4:10
3.1 lnc-CBLB-7:10
4.0 LINC00882:17
4.1 LINC00882:17
5.0 LINC00882:17
5.1 LINC00882:17
5.2 LINC00882:17