Transcript: LINC00879:2

Basic information

LNCipedia transcript ID: LINC00879:2 
HGNC Gene Symbol: LINC00879    
HGNC Full Gene Name: long intergenic non-protein coding RNA 879
Ensembl Gene ID: ENSG00000239589
Ensembl Transcript ID: ENST00000463200
RefSeq ID: NR_015400
Location (hg38): chr3:94938263-94991328
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1041 bp
Exons: 8
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000463200; ENST00000463200.1; RP11-118N24.3-001; OTTHUMT00000352926.1; NONHSAT090738; ENST00000463200.5; NR_015400.1
Alternative gene names: ENSG00000239589; RP11-118N24.3; ENSG00000239589.1; OTTHUMG00000159021.2; LINC00879; ENSG00000239589.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.2078 non-coding 
CPAT coding probability 9.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00879:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NSUN3-1:2
3.1 lnc-NSUN3-1:2
4.0 LINC00879:2
4.1 LINC00879:2
5.0 LINC00879:2
5.1 LINC00879:2
5.2 LINC00879:2