Transcript: LINC00877:12

Basic information

LNCipedia transcript ID: LINC00877:12 
HGNC Gene Symbol: LINC00877    
HGNC Full Gene Name: long intergenic non-protein coding RNA 877
Ensembl Gene ID: ENSG00000241163
Ensembl Transcript ID: ENST00000468646
Location (hg38): chr3:72035300-72100427
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2506 bp
Exons: 7
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT090431; ENST00000468646.2; ENST00000468646.6
Alternative gene names: ENSG00000241163.3; LINC00877; ENSG00000241163.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.5428 non-coding 
CPAT coding probability 8.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00877:12 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RYBP-4:13
4.0 LINC00877:12
4.1 LINC00877:12
5.0 LINC00877:12
5.1 LINC00877:12
5.2 LINC00877:12