Transcript: LINC00870:3

Basic information

LNCipedia transcript ID: LINC00870:3 
HGNC Gene Symbol: LINC00870    
HGNC Full Gene Name: long intergenic non-protein coding RNA 870
Ensembl Gene ID: ENSG00000243083
Ensembl Transcript ID: ENST00000469178
Location (hg38): chr3:72152759-72172099
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 458 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000469178; ENST00000469178.1; RP11-433A10.1-003; OTTHUMT00000357041.1; NONHSAT090446; ENST00000469178.5
Alternative gene names: ENSG00000243083; RP11-433A10.1; ENSG00000243083.1; OTTHUMG00000159724.1; LINC00870; ENSG00000243083.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -412.869 non-coding 
CPAT coding probability 2.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00870:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR27-3:2
3.1 lnc-GPR27-3:2
4.0 LINC00870:3
4.1 LINC00870:3
5.0 LINC00870:3
5.1 LINC00870:3
5.2 LINC00870:3