Transcript: LINC00861:1

Basic information

LNCipedia transcript ID: LINC00861:1 
HGNC Gene Symbol: LINC00861    
HGNC Full Gene Name: long intergenic non-protein coding RNA 861
Ensembl Gene ID: ENSG00000245164
Ensembl Transcript ID: ENST00000518964
Location (hg38): chr8:125922371-125951249
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 585 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518964; ENST00000518964.1; RP11-622O11.2-002; OTTHUMT00000381471.1; NONHSAT128983; ENST00000518964.5
Alternative gene names: ENSG00000245164; RP11-622O11.2; ENSG00000245164.2; OTTHUMG00000165025.1; LINC00861; ENSG00000245164.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -177.574 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00861:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM84B-7:1
3.1 lnc-FAM84B-7:1
4.0 LINC00861:1
4.1 LINC00861:1
5.0 LINC00861:1
5.1 LINC00861:1
5.2 LINC00861:1