Transcript: LINC00853:4

Basic information

LNCipedia transcript ID: LINC00853:4 
LNCipedia gene ID: LINC00853
Location (hg38): chr1:47179137-47179911
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 572 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT003058
Alternative gene names: ncRNA-a4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.4967 non-coding 
CPAT coding probability 4.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00853:4 no no no no

Available literature

  1. Ørom (2010), Long noncoding RNAs with enhancer-like function in human cells., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CYP4A22-2:7
4.0 LINC00853:4
4.1 LINC00853:4
5.0 LINC00853:4
5.1 LINC00853:4
5.2 LINC00853:4