Transcript: LINC00839:16

Basic information

LNCipedia transcript ID: LINC00839:16 
LNCipedia gene ID: LINC00839
Location (hg38): chr10:42491711-42495273
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3563 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1525:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 21.1343 non-coding 
CPAT coding probability 11.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00839:16 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00839:16
4.1 LINC00839:16
5.0 LINC00839:16
5.1 LINC00839:16
5.2 LINC00839:16