Transcript: LINC00824:6

Basic information

LNCipedia transcript ID: LINC00824:6 
HGNC Gene Symbol: LINC00824    
HGNC Full Gene Name: long intergenic non-protein coding RNA 824
Ensembl Gene ID: ENSG00000254275
Ensembl Transcript ID: ENST00000520766
Location (hg38): chr8:128420712-128561126
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 597 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520766; ENST00000520766.1; RP11-89M16.1-002; OTTHUMT00000381574.1; NONHSAT129097; ENST00000520766.5
Alternative gene names: ENSG00000253984; CTD-3056O22.1; ENSG00000254275.2; RP11-89M16.1; OTTHUMG00000165050.1; ENSG00000254275.6; LINC00824;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.3433 non-coding 
CPAT coding probability 11.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00824:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM75-2:4
3.1 lnc-TMEM75-2:5
4.0 LINC00824:6
4.1 LINC00824:6
5.0 LINC00824:6
5.1 LINC00824:6
5.2 LINC00824:6