Transcript: LINC00689:5

Basic information

LNCipedia transcript ID: LINC00689:5 
HGNC Gene Symbol: LINC00689    
HGNC Full Gene Name: long intergenic non-protein coding RNA 689
Ensembl Gene ID: ENSG00000231419
Ensembl Transcript ID: ENST00000438049
Location (hg38): chr7:159008421-159026238
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3946 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438049; ENST00000438049.1; AC004863.6-002; OTTHUMT00000322665.1; ENST00000438049.5
Alternative gene names: ENSG00000231419; AC004863.6; ENSG00000231419.2; OTTHUMG00000151442.1; LINC00689; ENSG00000231419.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 47.628 non-coding 
CPAT coding probability 41.26% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00689:5 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR60-4:4
3.1 lnc-WDR60-4:4
4.0 LINC00689:5
4.1 LINC00689:5
5.0 LINC00689:5
5.1 LINC00689:5
5.2 LINC00689:5