Transcript: LINC00683:2

Basic information

LNCipedia transcript ID: LINC00683:2 
HGNC Gene Symbol: LINC00683    
HGNC Full Gene Name: long intergenic non-protein coding RNA 683
Ensembl Gene ID: ENSG00000266256
Ensembl Transcript ID: ENST00000579781
Location (hg38): chr18:76615212-76625940
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3510 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579781.1; RP11-111H3.2-001; OTTHUMT00000445528.1; NONHSAT059938
Alternative gene names: ENSG00000266256.1; RP11-111H3.2; OTTHUMG00000179274.1; LINC00683;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.3211 non-coding 
CPAT coding probability 3.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00683:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-17M16.1.1-5:1
4.0 LINC00683:2
4.1 LINC00683:2
5.0 LINC00683:2
5.1 LINC00683:2
5.2 LINC00683:2