Transcript: LINC00682:5

Basic information

LNCipedia transcript ID: LINC00682:5 
LNCipedia gene ID: LINC00682
Location (hg38): chr4:41879525-41882552
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1362 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00007421
Alternative gene names: XLOC_003937; linc-PHOX2B-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.1885 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00682:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHOX2B-1:4
3.1 lnc-PHOX2B-2:4
4.0 LINC00682:5
4.1 LINC00682:5
5.0 LINC00682:5
5.1 LINC00682:5
5.2 LINC00682:5