Transcript: LINC00682:1

Basic information

LNCipedia transcript ID: LINC00682:1 
HGNC Gene Symbol: LINC00682    
HGNC Full Gene Name: long intergenic non-protein coding RNA 682
Ensembl Gene ID: ENSG00000245870
Ensembl Transcript ID: ENST00000504870
Location (hg38): chr4:41876481-41882611
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 632 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504870; TCONS_00007751; ENST00000504870.1; RP11-457P14.4-001; OTTHUMT00000360959.1; NONHSAT096175
Alternative gene names: ENSG00000245870; XLOC_003937; linc-PHOX2B-2; RP11-457P14.4; ENSG00000245870.2; OTTHUMG00000160528.2; LINC00682; ; ENSG00000245870.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.1481 non-coding 
CPAT coding probability 2.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00682:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHOX2B-1:1
3.1 lnc-PHOX2B-2:1
4.0 LINC00682:1
4.1 LINC00682:1
5.0 LINC00682:1
5.1 LINC00682:1
5.2 LINC00682:1