Transcript: LINC00678:2

Basic information

LNCipedia transcript ID: LINC00678:2 
HGNC Gene Symbol: LINC00678    
HGNC Full Gene Name: long intergenic non-protein coding RNA 678
Ensembl Gene ID: ENSG00000254934
Ensembl Transcript ID: ENST00000534757
Location (hg38): chr11:27617993-27634627
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 798 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000534757; ENST00000534757.1; MIR4454-002; OTTHUMT00000388316.1; NONHSAT018515
Alternative gene names: ENSG00000254934; RP11-587D21.5; ENSG00000254934.1; MIR4454; OTTHUMG00000166194.1; LINC00678; ENSG00000254934.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.3554 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00678:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BDNF-1:1
3.1 lnc-BDNF-1:1
4.0 LINC00678:2
4.1 LINC00678:2
5.0 LINC00678:2
5.1 LINC00678:2
5.2 LINC00678:2