Transcript: LINC00667:21

Basic information

LNCipedia transcript ID: LINC00667:21 
LNCipedia gene ID: LINC00667
Location (hg38): chr18:5238100-5246689
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6886 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000263753.2|FTMT27100000828.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 26.568 non-coding 
CPAT coding probability 2.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00667:21 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Yu (1997), Large-scale concatenation cDNA sequencing., Genome Res.
  3. Andersson (1996), A "double adaptor" method for improved shotgun library construction., Anal. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00667:21
5.0 LINC00667:21
5.1 LINC00667:21
5.2 LINC00667:21