Transcript: LINC00667:18

Basic information

LNCipedia transcript ID: LINC00667:18 
HGNC Gene Symbol: LINC00667    
HGNC Full Gene Name: long intergenic non-protein coding RNA 667
Ensembl Gene ID: ENSG00000263753
Ensembl Transcript ID: ENST00000577439
Location (hg38): chr18:5240990-5246508
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3372 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000577439.1; RP11-835E18.2-003; OTTHUMT00000443376.1; NONHSAT057073
Alternative gene names: ENSG00000263753.1; RP11-835E18.2; OTTHUMG00000178805.1; ENSG00000263753.2; LINC00667; ENSG00000263753.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.9521 non-coding 
CPAT coding probability 4.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00667:18 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Yu (1997), Large-scale concatenation cDNA sequencing., Genome Res.
  3. Andersson (1996), A "double adaptor" method for improved shotgun library construction., Anal. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP001496.1-1:7
4.0 LINC00667:18
4.1 LINC00667:18
5.0 LINC00667:18
5.1 LINC00667:18
5.2 LINC00667:18