Transcript: LINC00667:1

Basic information

LNCipedia transcript ID: LINC00667:1 
LNCipedia gene ID: LINC00667
Location (hg38): chr18:5232876-5238333
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 414 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000458396.1; RP11-835E18.2-201; NONHSAT057056
Alternative gene names: ENSG00000263753.1; RP11-835E18.2; OTTHUMG00000178805.1; ENSG00000263753.2; LINC00667;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -242.0887 non-coding 
CPAT coding probability 59.46% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00667:1 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Yu (1997), Large-scale concatenation cDNA sequencing., Genome Res.
  3. Andersson (1996), A "double adaptor" method for improved shotgun library construction., Anal. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP001496.1-1:1
4.0 LINC00667:1
4.1 LINC00667:1
5.0 LINC00667:1
5.1 LINC00667:1
5.2 LINC00667:1