Transcript: LINC00665:11

Basic information

LNCipedia transcript ID: LINC00665:11 
HGNC Gene Symbol: LINC00665    
HGNC Full Gene Name: long intergenic non-protein coding RNA 665
Ensembl Gene ID: ENSG00000232677
Ensembl Transcript ID: ENST00000438368
Location (hg38): chr19:36319751-36331708
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1863 bp
Exons: 6
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438368.2; ENST00000438368.6
Alternative gene names: ENSG00000232677.2; LINC00665; ENSG00000232677.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 33.3474 non-coding 
CPAT coding probability 9.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00665:11 no no no no

Available literature

  1. Jia (2018), Exploring the molecular pathogenesis and biomarkers of high risk oral premalignant lesions on the basis of long noncoding RNA expression profiling by serial analysis of gene expression., Eur. J. Cancer Prev.
  2. Wen (2018), Expression of the Long Intergenic Non-Protein Coding RNA 665 (LINC00665) Gene and the Cell Cycle in Hepatocellular Carcinoma Using The Cancer Genome Atlas, the Gene Expression Omnibus, and Quantitative Real-Time Polymerase Chain Reaction., Med. Sci. Monit.
  3. Li (2015), Expression of long non-coding RNA DLX6-AS1 in lung adenocarcinoma., Cancer Cell Int.
  4. Li (2015), Study on expression of lncRNA RGMB-AS1 and repulsive guidance molecule b in non-small cell lung cancer., Diagn Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZFP14-1:10
4.0 LINC00665:11
4.1 LINC00665:11
5.0 LINC00665:11
5.1 LINC00665:11
5.2 LINC00665:11