Transcript: LINC00662:9

Basic information

LNCipedia transcript ID: LINC00662:9 
HGNC Gene Symbol: LINC00662    
HGNC Full Gene Name: long intergenic non-protein coding RNA 662
RefSeq ID: NR_027301
Location (hg38): chr19:27790493-27793940
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2051 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_027301; NR_027301.1
Alternative gene names: ; LINC00662


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.5606 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00662:9 no no no no

Available literature

  1. Di Gaetano (2014), Sardinians genetic background explained by runs of homozygosity and genomic regions under positive selection., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UQCRFS1-9:30
4.0 LINC00662:9
4.1 LINC00662:9
5.0 LINC00662:9
5.1 LINC00662:9
5.2 LINC00662:9