Transcript: LINC00649:23

Basic information

LNCipedia transcript ID: LINC00649:23 
LNCipedia gene ID: LINC00649
Location (hg38): chr21:33950894-33952366
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1473 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT081852; FPKM1_group_20105_transcript_5
Alternative gene names: TCONS_00028768


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.4945 non-coding 
CPAT coding probability 2.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00649:23 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITSN1-2:21
4.0 LINC00649:23
4.1 LINC00649:23
5.0 LINC00649:23
5.1 LINC00649:23
5.2 LINC00649:23