Transcript: LINC00648:5

Basic information

LNCipedia transcript ID: LINC00648:5 
HGNC Gene Symbol: LINC00648    
HGNC Full Gene Name: long intergenic non-protein coding RNA 648
Ensembl Gene ID: ENSG00000259129
Ensembl Transcript ID: ENST00000555985
Location (hg38): chr14:47764954-47795014
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2885 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00022367; ENST00000555985; ENST00000555985.1; RP11-479H16.1-001; OTTHUMT00000410573.1; ENST00000555985.5
Alternative gene names: XLOC_011013; linc-MDGA2-1; ENSG00000259129; RP11-479H16.1; ENSG00000259129.1; OTTHUMG00000170822.3; LINC00648; ENSG00000259129.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.9382 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00648:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MDGA2-1:2
3.1 lnc-MDGA2-1:2
4.0 LINC00648:5
4.1 LINC00648:5
5.0 LINC00648:5
5.1 LINC00648:5
5.2 LINC00648:5