Transcript: LINC00645:2

Basic information

LNCipedia transcript ID: LINC00645:2 
LNCipedia gene ID: LINC00645
RefSeq ID: NR_039992
Location (hg38): chr14:27612588-27639636
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3535 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT036142; NR_039992; NR_039992.2
Alternative gene names: ; LINC00645


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.9638 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00645:2 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXG1-2:4
4.0 LINC00645:2
4.1 LINC00645:2
5.0 LINC00645:2
5.1 LINC00645:2
5.2 LINC00645:2