Transcript: LINC00641:2

Basic information

LNCipedia transcript ID: LINC00641:2 
HGNC Gene Symbol: LINC00641    
HGNC Full Gene Name: long intergenic non-protein coding RNA 641
Ensembl Gene ID: ENSG00000258441
Ensembl Transcript ID: ENST00000555688
Location (hg38): chr14:21200461-21206900
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1763 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555688; ENST00000555688.1; CTD-2552B11.4-001; OTTHUMT00000410217.1
Alternative gene names: ENSG00000258441; CTD-2552B11.4; ENSG00000258441.1; OTTHUMG00000170756.1; LINC00641;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.538 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00641:2 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  2. Zhi (2015), The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HNRNPC-1:2
3.1 lnc-HNRNPC-1:1
4.0 LINC00641:2
4.1 LINC00641:2
5.0 LINC00641:2
5.1 LINC00641:2
5.2 LINC00641:2