Transcript: LINC00641:1

Basic information

LNCipedia transcript ID: LINC00641:1 
LNCipedia gene ID: LINC00641
Location (hg38): chr14:21200462-21206900
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1762 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute
Alternative transcript names: ENST00000505651; TCONS_00022406
Alternative gene names: ENSG00000251466; XLOC_010967; linc-OR5AU1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.538 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00641:1 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  2. Zhi (2015), The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HNRNPC-1:1
3.1 lnc-HNRNPC-1:2
4.0 LINC00641:1
4.1 LINC00641:1
5.0 LINC00641:1
5.1 LINC00641:1
5.2 LINC00641:1