Transcript: LINC00639:1

Basic information

LNCipedia transcript ID: LINC00639:1 
LNCipedia gene ID: LINC00639
Location (hg38): chr14:38749341-38948273
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4494 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000553932.1; RP11-566K8.2-001; OTTHUMT00000410191.1; NONHSAT036494
Alternative gene names: ENSG00000259070.1; RP11-566K8.2; OTTHUMG00000170746.1; LINC00639;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 102.2103 coding 
CPAT coding probability 49.34% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00639:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC23A-1:1
4.0 LINC00639:1
4.1 LINC00639:1
5.0 LINC00639:1
5.1 LINC00639:1
5.2 LINC00639:1