Transcript: LINC00635:21

Basic information

LNCipedia transcript ID: LINC00635:21 
LNCipedia gene ID: LINC00635
RefSeq ID: NR_015414
Location (hg38): chr3:107841662-107878068
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1760 bp
Exons: 11
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000464359; ENST00000464359.1; RP11-631B21.1-001; OTTHUMT00000353780.1; NR_015414; NR_015414.1
Alternative gene names: ENSG00000241469; RP11-631B21.1; ENSG00000241469.1; OTTHUMG00000159195.1; ; LINC00635


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.8171 non-coding 
CPAT coding probability 3.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00635:21 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD47-2:12
3.1 lnc-CD47-2:8
4.0 LINC00635:21
4.1 LINC00635:21
5.0 LINC00635:21
5.1 LINC00635:21
5.2 LINC00635:21