Transcript: LINC00623:49

Basic information

LNCipedia transcript ID: LINC00623:49 
LNCipedia gene ID: LINC00623
Location (hg38): chr1:120952560-120953317
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 321 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002157; NONHSAT006233
Alternative gene names: XLOC_000398; linc-FCGR1A-2; KIAA0493


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.1723 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00623:49 no no no no

Available literature

  1. Yan (2017), Long non-coding RNA ENST00000457645 reverses cisplatin resistance in CP70 ovarian cancer cells., Genet. Mol. Res.
  2. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  3. Wang (2014), [Effect of curcumin on radiosensitization of CNE-2 cells and its mechanism]., Zhongguo Zhong Yao Za Zhi


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL358813.2-2:1
3.1 lnc-AL358813.2-2:13
4.0 LINC00869:38
4.1 LINC00869:38
5.0 LINC00869:38
5.1 LINC00623:46
5.2 LINC00623:49