Transcript: LINC00620:8

Basic information

LNCipedia transcript ID: LINC00620:8 
LNCipedia gene ID: LINC00620
Location (hg38): chr3:13717599-13735641
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 287 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005950; NONHSAT088315
Alternative gene names: XLOC_002580; linc-TMEM43;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -358.7643 non-coding 
CPAT coding probability 6.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00620:8 no no no no

Available literature

  1. Senchenko (2013), Novel tumor suppressor candidates on chromosome 3 revealed by NotI-microarrays in cervical cancer., Epigenetics
  2. Alliey-Rodriguez (2011), Genome-wide association study of personality traits in bipolar patients., Psychiatr. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FBLN2-1:1
3.1 lnc-FBLN2-1:3
4.0 LINC00620:8
4.1 LINC00620:8
5.0 LINC00620:8
5.1 LINC00620:8
5.2 LINC00620:8