Transcript: LINC00620:5

Basic information

LNCipedia transcript ID: LINC00620:5 
LNCipedia gene ID: LINC00620
RefSeq ID: NR_027103
Location (hg38): chr3:13650721-13746635
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 994 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000419618.1; AC093611.1-001; OTTHUMT00000340428.1; NONHSAT088313; NR_027103; NR_027103.1
Alternative gene names: ENSG00000224514.1; AC093611.1; OTTHUMG00000155508.1; LINC00620;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.5045 non-coding 
CPAT coding probability 7.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00620:5 no no no no

Available literature

  1. Senchenko (2013), Novel tumor suppressor candidates on chromosome 3 revealed by NotI-microarrays in cervical cancer., Epigenetics
  2. Alliey-Rodriguez (2011), Genome-wide association study of personality traits in bipolar patients., Psychiatr. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FBLN2-1:2
4.0 LINC00620:5
4.1 LINC00620:5
5.0 LINC00620:5
5.1 LINC00620:5
5.2 LINC00620:5