Transcript: LINC00620:11

Basic information

LNCipedia transcript ID: LINC00620:11 
LNCipedia gene ID: LINC00620
Location (hg38): chr3:13650664-13752417
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 8018 bp
Exons: 7
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224514.1|MICT00000238302.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -2.4767 non-coding 
CPAT coding probability 7.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00620:11 no no no no

Available literature

  1. Senchenko (2013), Novel tumor suppressor candidates on chromosome 3 revealed by NotI-microarrays in cervical cancer., Epigenetics
  2. Alliey-Rodriguez (2011), Genome-wide association study of personality traits in bipolar patients., Psychiatr. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00620:11
5.0 LINC00620:11
5.1 LINC00620:11
5.2 LINC00620:11