Transcript: LINC00616:3

Basic information

LNCipedia transcript ID: LINC00616:3 
HGNC Gene Symbol: LINC00616    
HGNC Full Gene Name: long intergenic non-protein coding RNA 616
Ensembl Gene ID: ENSG00000248307
Ensembl Transcript ID: ENST00000513895
Location (hg38): chr4:138115451-138130688
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 566 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000513895; ENST00000513895.1; LINC00616-004; OTTHUMT00000364376.1; NONHSAT098421
Alternative gene names: ENSG00000248307; RP11-8P17.1; ENSG00000248307.1; LINC00616; OTTHUMG00000161281.1; ENSG00000248307.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.3043 non-coding 
CPAT coding probability 20.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00616:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC7A11-3:2
3.1 lnc-SLC7A11-2:2
4.0 LINC00616:3
4.1 LINC00616:3
5.0 LINC00616:3
5.1 LINC00616:3
5.2 LINC00616:3