Transcript: LINC00612:2

Basic information

LNCipedia transcript ID: LINC00612:2 
HGNC Gene Symbol: LINC00612    
HGNC Full Gene Name: long intergenic non-protein coding RNA 612
Ensembl Gene ID: ENSG00000214851
Ensembl Transcript ID: ENST00000538094
Location (hg38): chr12:9055586-9065070
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2213 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000538094; ENST00000538094.1; LINC00612-001; OTTHUMT00000399174.1; NONHSAT026380
Alternative gene names: ENSG00000214851; C12orf33; ENSG00000214851.3; LINC00612; OTTHUMG00000168288.1; ENSG00000214851.4; MGC40170; FLJ41814


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 179.5637 coding 
CPAT coding probability 85.70% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00612:2 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-A2M-1:2
3.1 lnc-A2M-1:2
4.0 LINC00612:2
4.1 LINC00612:2
5.0 LINC00612:2
5.1 LINC00612:2
5.2 LINC00612:2