Transcript: LINC00607:3

Basic information

LNCipedia transcript ID: LINC00607:3 
HGNC Gene Symbol: LINC00607    
HGNC Full Gene Name: long intergenic non-protein coding RNA 607
Ensembl Gene ID: ENSG00000235770
Ensembl Transcript ID: ENST00000445174
RefSeq ID: NR_037195
Location (hg38): chr2:215611563-215843536
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3690 bp
Exons: 10
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000445174.1; LINC00607-001; OTTHUMT00000337314.1; NONHSAT076770; NR_037195; ENST00000445174.5; NR_037195.1
Alternative gene names: ENSG00000235770.1; LINC00607; OTTHUMG00000154834.1; ENSG00000235770.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.3202 non-coding 
CPAT coding probability 7.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00607:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FN1-3:2
4.0 LINC00607:3
4.1 LINC00607:3
5.0 LINC00607:3
5.1 LINC00607:3
5.2 LINC00607:3