Transcript: LINC00581:11

Basic information

LNCipedia transcript ID: LINC00581:11 
LNCipedia gene ID: LINC00581
Ensembl Gene ID: ENSG00000231754
Ensembl Transcript ID: ENST00000447728
Location (hg38): chr6:21522476-21523772
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 543 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011465; ENST00000447728; ENST00000447728.1; RP11-204E9.1-001; OTTHUMT00000039989.1; NONHSAT108041
Alternative gene names: XLOC_005638; linc-MBOAT1-1; ENSG00000231754; RP11-204E9.1; ENSG00000231754.1; OTTHUMG00000014342.1; ENSG00000231754.2; ; AL512380.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.7975 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00581:11 no no no no

Available literature

  1. Henshall (2015), Epigenetics and Epilepsy., Cold Spring Harb Perspect Med
  2. Vandeweyer (2012), A de novo balanced t(2;6)(p15;p22.3) in a patient with West Syndrome disrupts a lnc-RNA., Epilepsy Res.
  3. Cabili (2011), Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses., Genes Dev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRL-5:1
3.1 lnc-PRL-5:1
4.0 lnc-PRL-5:1
4.1 LINC00581:11
5.0 LINC00581:11
5.1 LINC00581:11
5.2 LINC00581:11